![]() ![]() Example 2: Panel batch (Iterate by panel) Click the Display button to show the table in FlowJo with live recalculationsī.This will default on the group currently selected in the workspace In the Table Editor, select the group for which you wish to generate statistics.In the case of a simple batch, you probably just want your selection of columns to be batched down the list of samples in your current workspace group. Example 1: Simple batch (Iterate by sample) Iteration options (Group, Iterate by) in the Table Editor. For example, if you wish to develop a template, you may want to select a specific group and change the iteration type to iterate by a panel or keyword.įig 1. However, fancier iteration methods can be used here, similarly to the Layout Editor. These combine other columns from your table in mathematical or logical expressions.īy default, iteration is set to report the columns defined in the table for every sample in the currently selected workspace group. To add a keyword column, switch to the Keyword tab and select which keywords you’d like to display.To add a “stat” column, choose the Statistic tab, and choose the appropriate sample, population, and optionally a parameter/percentile.This opens the Column Information dialog. Within the Edit Tab, click the “Add Column” button in the Columns band. Dragging in a platform node (Cell Cycle, etc.) will explode that node into all of its summary statistics and place those each in their own column ( Pro Tip: you may want to select some and remove them.Dragging in a stat-node (median, count, CV, etc.) will report that statistic’s value.Dragging in a gate creates a “frequency of parent” column.Columns in the output table can be defined by dragging in nodes from the Workspace window, or you can add them manually via the Column Information dialog.Ī. Rows in the output table are always going to be samples, or populations, from your current workspace selection. In this step, we define our output’s columns. The general workflow of batching tables is to:Įach of these steps are described in detail below. To give a table a custom name, simply double-click the default name “Untitled” in the upper left hand corner of the Tables band, type in the new name, and press enter. Custom-named tables will help you organize what tables contain what statistical information you are gathering. Similarly to batching gates in the workspace and batching plots in the Layout Editor, the Table Editor is setup for batching numbers such as summary statistics (mean, median, CV, etc.), gate frequencies, values of keywords, and formulas. Notice below the icons in the Population column – which correspond to the options of heatmap, S.D., or a pre-defined range.In FlowJo, batch analysis takes advantage of your computer’s processing power and follows an analysis template to analyze multiple sets of data. This is done by checking the “Define as Control” button.Īdditionally, each column can be assigned special formatting flags which will change text/background color and/or font style. When generated, a table will not display “hidden” columns, but the numbers in those can still be referenced by formulas in “showing” columns.įinally, you can “hold” a value by choosing not to iterate it. You can also choose to hide a column altogether, this is useful if a column only serves an intermediate step in a formula calculation. ![]() This can sometimes be hard to read – entering your own custom labels may make the output easier to read. – various details about where the number came from. By default a name displayed for the header of each column will be constructed using the path, ancestry, parameter, etc. Defining Column Formatting in the Table Editorįirst, it may be useful to give your column a custom name. ![]()
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